For example UNO_R3_SHIELD from System library:
but when swapped to the bottom layer, the multi-layer pads swap but the Document layer graphics do not:
A better way to see the effect is to place this footprint into a PCB then swap it from top to bottom:
https://easyeda.com/component/49eaeefd7a104d6b8e6773a7159802b1
Top layer:
Bottom layer:
Following along with the progress to resolution of this.