Sorry but I don't understand your issue. If I copy your schematic:  and then do **Convert to PCB...** I get:  If I do a quick PCB layout:  then Photo View shows: I get Running the Gerbers gives:  and checking the generated gerbers in gerbv: 

Hi If you mean the "Switch Bus PCB" & "Switch\_Bus\_PCB\_1\.0mm" please check this tip: [https://www.youtube.com/watch?v=L08zG9O2Z38&index=20&list=PLbKMtvtYbdPNPsFuhSUR93WB0xtavc6yh](https://www.youtube.com/watch?v=L08zG9O2Z38&index=20&list=PLbKMtvtYbdPNPsFuhSUR93WB0xtavc6yh)

Sorry. I thought the link went to the specific board. I am talking about the ones labeled CY8CKIT-043 and CY8CKIT-043.1. They both have two 2.54 mm pitch headers, which are supposed to be there, and one 1.27 mm pitch small header, which is not supposed to be there. The small header is just above the bottom header and to the right a little bit. When I edit the board in the editor I do not see the header, and so I am not able to remove it.

@VLSinTEGraTOR, * Have you created these PCBs directly in the EasyEDA PCB Editor or are they imported from some other tool? I have no idea how this has happened but if I copy your CY8CKIT-043, generate the gerbers for it and then view them in gerbv I see the 1.27mm pitch connector and I also see what looks like a completely different PCB embedded in what - according to the .GTL suffix - should be the top layer but a top layer is already exists as the Gerber_TopLayer.GTL: 

I created the whole thing in EasyEDA PCB Editor. I don't recognize that other PCB from anything I have used or opened. The one with the C1 connectors and the headers is all hand drawn in EasyEDA PCB Editor.

@VLSinTEGraTOR, I suggest that you send a zipped copy of your whole project to support @ easyeda.com for investigation.  Then click **Download project** and find the downloaded zip in the lower left of the window: 

Thanks for the instructional screenshots. I will do that.