Hi! :)
I have 3 types of pads for my double sided PCB. I will be mounting parts on both sides. All parts are through-hole parts. One side, the top layer, has room for only LED's. The other side, the bottom layer, will be mounting several resistors. I am using 3 types of pads; top, bottom and all-layers. The DRC shows no errors on the layout. When looking at photo mode, only the holes that are "all layers" show up with holes on both sides. The holes for the other two types only show up on one side of the board. I want every hole to go through the board. Photo of both sides are below. Notice the tiny hole on the top for a via. Notice the pad next to it on the bottom side layer with the green arrow pointing to it. Notice on the top view of the board, that hole does not exist. That is only one example. There are approximately 50 other holes that are missing. Am i doing something incorrectly, or is this an error in the software?
![Holes are missing from single layer pads][1]
[1]: /editor/20160427/571fadcf85f27.png