The RebuildCopperArea operation should happen automatically at logical points in the process. I released a board that had inner layers, and I added some new vias AFTER drawing the inner board copper areas. All of these new vias were shorted to the ground plane when I received the PCB, even though their nets were not GND. I think if I had pushed "RebuildCopperArea" for the inner layer copper areas, this would not have happened. However, since they are not the same net, it would be reasonable to make sure the software automatically Rebuilds these copper areas so the vias are not shorted. I don't know why the DRC did not catch this, but I'm quite sure I ran the DRC many times before releasing the PCB.
Chrome
69.0.3497.100
Windows
10
EasyEDA
5.7.26